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» Informative sampling for large unbalanced data sets
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BMCBI
2008
129views more  BMCBI 2008»
15 years 1 months ago
Gene set enrichment analysis for non-monotone association and multiple experimental categories
Background: Recently, microarray data analyses using functional pathway information, e.g., gene set enrichment analysis (GSEA) and significance analysis of function and expression...
Rongheng Lin, Shuangshuang Dai, Richard D. Irwin, ...
VISUALIZATION
1996
IEEE
15 years 5 months ago
Flexible Information Visualization of Multivariate Data from Biological Sequence Similarity Searches
Information visualization faces challenges presented by the need to represent abstract data and the relationships within the data. Previously, we presented a system for visualizin...
Ed Huai-hsin Chi, John Riedl, Elizabeth Shoop, Joh...
SC
1995
ACM
15 years 5 months ago
Communication Optimizations for Parallel Computing Using Data Access Information
Given the large communication overheads characteristic of modern parallel machines, optimizations that eliminate, hide or parallelize communication may improve the performance of ...
Martin C. Rinard
BMCBI
2008
166views more  BMCBI 2008»
15 years 1 months ago
Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual informa
Background: Probability based statistical learning methods such as mutual information and Bayesian networks have emerged as a major category of tools for reverse engineering mecha...
Weijun Luo, Kurt D. Hankenson, Peter J. Woolf
KDD
2009
ACM
180views Data Mining» more  KDD 2009»
15 years 6 months ago
Parallel community detection on large networks with propinquity dynamics
Graphs or networks can be used to model complex systems. Detecting community structures from large network data is a classic and challenging task. In this paper, we propose a nove...
Yuzhou Zhang, Jianyong Wang, Yi Wang, Lizhu Zhou