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BMCBI
2008
214views more  BMCBI 2008»
15 years 2 months ago
Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research
Background: This paper describes techniques for accelerating the performance of the string set matching problem with particular emphasis on applications in computational proteomic...
Yoginder S. Dandass, Shane C. Burgess, Mark Lawren...
BMCBI
2010
193views more  BMCBI 2010»
15 years 2 months ago
Probe set filtering increases correlation between Affymetrix GeneChip and qRT-PCR expression measurements
Background: Affymetrix GeneChip microarrays are popular platforms for expression profiling in two types of studies: detection of differential expression computed by p-values of t-...
Jakub Mieczkowski, Magdalena E. Tyburczy, Michal D...
PLDI
2010
ACM
15 years 7 months ago
Decoupled lifeguards: enabling path optimizations for dynamic correctness checking tools
Dynamic correctness checking tools (a.k.a. lifeguards) can detect a wide array of correctness issues, such as memory, security, and concurrency misbehavior, in unmodified executa...
Olatunji Ruwase, Shimin Chen, Phillip B. Gibbons, ...
ICIAP
2005
ACM
16 years 2 months ago
Optimal Parameter Estimation for MRF Stereo Matching
Abstract. This paper presents an optimisation technique to select automatically a set of control parameters for a Markov Random Field applied to stereo matching. The method is base...
Riccardo Gherardi, Umberto Castellani, Andrea Fusi...
EMNLP
2009
14 years 11 months ago
Web-Scale Distributional Similarity and Entity Set Expansion
Computing the pairwise semantic similarity between all words on the Web is a computationally challenging task. Parallelization and optimizations are necessary. We propose a highly...
Patrick Pantel, Eric Crestan, Arkady Borkovsky, An...