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» Integrative Analysis of Protein Interaction Data
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CHI
2008
ACM
15 years 10 months ago
Integrating statistics and visualization: case studies of gaining clarity during exploratory data analysis
Although both statistical methods and visualizations have been used by network analysts, exploratory data analysis remains a challenge. We propose that a tight integration of thes...
Adam Perer, Ben Shneiderman
BMCBI
2007
99views more  BMCBI 2007»
14 years 9 months ago
The Deuterator: software for the determination of backbone amide deuterium levels from H/D exchange MS data
Background: The combination of mass spectrometry and solution phase amide hydrogen/deuterium exchange (H/D exchange) experiments is an effective method for characterizing protein ...
B. D. Pascal, M. J. Chalmers, S. A. Busby, C. C. M...
BMCBI
2008
123views more  BMCBI 2008»
14 years 9 months ago
Functional module detection by functional flow pattern mining in protein interaction networks
eraction networks. In this abstract, we extend this approach by mining functional flow patterns for the purpose of detecting small-sized modules for specific functions. Methods Our...
Young-Rae Cho, Lei Shi, Aidong Zhang
NAR
2011
241views Computer Vision» more  NAR 2011»
14 years 4 months ago
PRIDB: a protein-RNA interface database
The Protein–RNA Interface Database (PRIDB) is a comprehensive database of protein–RNA interfaces extracted from complexes in the Protein Data Bank (PDB). It is designed to fac...
Benjamin A. Lewis, Rasna R. Walia, Michael Terribi...
NAR
2007
111views more  NAR 2007»
14 years 9 months ago
Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together
Protein interaction data exists in a number of repositories. Each repository has its own data format, molecule identifier and supplementary information. Michigan Molecular Interac...
Magesh Jayapandian, Adriane Chapman, V. Glenn Tarc...