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» Integrative missing value estimation for microarray data
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BMCBI
2008
115views more  BMCBI 2008»
14 years 9 months ago
Genome-scale cluster analysis of replicated microarrays using shrinkage correlation coefficient
Background: Currently, clustering with some form of correlation coefficient as the gene similarity metric has become a popular method for profiling genomic data. The Pearson corre...
Jianchao Yao, Chunqi Chang, Mari L. Salmi, Yeung S...
BMCBI
2010
136views more  BMCBI 2010»
14 years 9 months ago
An integrated Bayesian analysis of LOH and copy number data
Background: Cancer and other disorders are due to genomic lesions. SNP-microarrays are able to measure simultaneously both genotype and copy number (CN) at several Single Nucleoti...
Paola M. V. Rancoita, Marcus Hutter, Francesco Ber...
BMCBI
2007
169views more  BMCBI 2007»
14 years 9 months ago
Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and i
Background: Gene expression microarray and other multiplex data hold promise for addressing the challenges of cellular complexity, refined diagnoses and the discovery of well-targ...
Abdallah Sayyed-Ahmad, Kagan Tuncay, Peter J. Orto...
JMLR
2008
104views more  JMLR 2008»
14 years 9 months ago
Learning Reliable Classifiers From Small or Incomplete Data Sets: The Naive Credal Classifier 2
In this paper, the naive credal classifier, which is a set-valued counterpart of naive Bayes, is extended to a general and flexible treatment of incomplete data, yielding a new cl...
Giorgio Corani, Marco Zaffalon
ISMB
2000
14 years 10 months ago
Pattern Recognition of Genomic Features with Microarrays: Site Typing of Mycobacterium Tuberculosis Strains
Mycobacterium tuberculosis (M. tb.) strains differ in the number and locations of a transposon-like insertion sequence known as IS6110. Accurate detection of this sequence can be ...
Soumya Raychaudhuri, Joshua M. Stuart, Xuemin Liu,...