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» InterRNA: a database of base interactions in RNA structures
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BMCBI
2010
104views more  BMCBI 2010»
14 years 10 months ago
Parameters for accurate genome alignment
Background: Genome sequence alignments form the basis of much research. Genome alignment depends on various mundane but critical choices, such as how to mask repeats and which sco...
Martin C. Frith, Michiaki Hamada, Paul Horton
BMCBI
2006
145views more  BMCBI 2006»
14 years 10 months ago
Fast-Find: A novel computational approach to analyzing combinatorial motifs
Background: Many vital biological processes, including transcription and splicing, require a combination of short, degenerate sequence patterns, or motifs, adjacent to defined seq...
Micah Hamady, Erin Peden, Rob Knight, Ravinder Sin...
BMCBI
2005
113views more  BMCBI 2005»
14 years 10 months ago
Alternative splicing and protein function
Background: Alternative splicing is a major mechanism of generating protein diversity in higher eukaryotes. Although at least half, and probably more, of mammalian genes are alter...
A. D. Neverov, Irena I. Artamonova, Ramil N. Nurtd...
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JUCS
2008
124views more  JUCS 2008»
14 years 10 months ago
Structure-Based Crawling in the Hidden Web
: The number of applications that need to crawl the Web to gather data is growing at an ever increasing pace. In some cases, the criterion to determine what pages must be included ...
Márcio L. A. Vidal, Altigran Soares da Silv...
NAR
2007
150views more  NAR 2007»
14 years 10 months ago
CellCircuits: a database of protein network models
CellCircuits (http://www.cellcircuits.org) is an openaccess database of molecular network models, designed to bridge the gap between databases of individual pairwise molecular int...
H. Craig Mak, Mike Daly, Bianca Gruebel, Trey Idek...