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BMCBI
2006
139views more  BMCBI 2006»
14 years 11 months ago
Integrated functional visualization of eukaryotic genomes
Background: Increasing amounts of data from large scale whole genome analysis efforts demands convenient tools for manipulation, visualization and investigation. Whole genome plot...
Rohit Ghai, Hannes Lindemann, Trinad Chakraborty
BMCBI
2006
110views more  BMCBI 2006»
14 years 11 months ago
Modelling the network of cell cycle transcription factors in the yeast Saccharomyces cerevisiae
Background: Reverse-engineering regulatory networks is one of the central challenges for computational biology. Many techniques have been developed to accomplish this by utilizing...
Shawn Cokus, Sherri Rose, David Haynor, Niels Gr&o...
BMCBI
2006
129views more  BMCBI 2006»
14 years 11 months ago
A literature-based similarity metric for biological processes
Background: Recent analyses in systems biology pursue the discovery of functional modules within the cell. Recognition of such modules requires the integrative analysis of genome-...
Monica Chagoyen, Pedro Carmona-Saez, Concha Gil, J...
CAD
2006
Springer
14 years 11 months ago
On visual similarity based 2D drawing retrieval
A large amount of 2D drawings have been produced in engineering fields. To reuse and share the available drawings efficiently, we propose two methods in this paper, namely 2.5D sp...
Jiantao Pu, Karthik Ramani
BMCBI
2007
216views more  BMCBI 2007»
14 years 11 months ago
A replica exchange Monte Carlo algorithm for protein folding in the HP model
Background: The ab initio protein folding problem consists of predicting protein tertiary structure from a given amino acid sequence by minimizing an energy function; it is one of...
Chris Thachuk, Alena Shmygelska, Holger H. Hoos