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BMCBI
2005
114views more  BMCBI 2005»
15 years 6 months ago
A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins
Background: Structure prediction of membrane proteins is still a challenging computational problem. Hidden Markov models (HMM) have been successfully applied to the problem of pre...
Piero Fariselli, Pier Luigi Martelli, Rita Casadio
TIP
2010
160views more  TIP 2010»
15 years 1 months ago
Development and Optimization of Regularized Tomographic Reconstruction Algorithms Utilizing Equally-Sloped Tomography
We develop two new algorithms for tomographic reconstruction which incorporate the technique of equally-sloped tomography (EST) and allow for the optimized and flexible implementat...
Yu Mao, Benjamin P. Fahimian, Stanley Osher, Jianw...
RECOMB
2005
Springer
16 years 6 months ago
Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences
Abstract. In order to guarantee that the optimal motif is found, traditional pattern-driven approaches perform an exhaustive search over all candidate motifs of length l. We develo...
Sing-Hoi Sze, Xiaoyan Zhao
INFOCOM
2005
IEEE
16 years 1 days ago
Practical algorithms for performance guarantees in buffered crossbars
— This paper is about high capacity switches and routers that give guaranteed throughput, rate and delay guarantees. Many routers are built using input queueing or combined input...
Shang-Tse Chuang, Sundar Iyer, Nick McKeown
PODC
2005
ACM
16 years 18 hour ago
Primal-dual based distributed algorithms for vertex cover with semi-hard capacities
In this paper we consider the weighted, capacitated vertex cover problem with hard capacities (capVC). Here, we are given an undirected graph G = (V, E), non-negative vertex weigh...
Fabrizio Grandoni, Jochen Könemann, Alessandr...