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BMCBI
2010
77views more  BMCBI 2010»
15 years 4 months ago
web cellHTS2: A web-application for the analysis of high-throughput screening data
Background: The analysis of high-throughput screening data sets is an expanding field in bioinformatics. Highthroughput screens by RNAi generate large primary data sets which need...
Oliver Pelz, Moritz Gilsdorf, Michael Boutros
BMCBI
2006
115views more  BMCBI 2006»
15 years 4 months ago
SimArray: a user-friendly and user-configurable microarray design tool
Background: Microarrays were first developed to assess gene expression but are now also used to map protein-binding sites and to assess allelic variation between individuals. Rega...
Richard P. Auburn, Roslin R. Russell, Bettina Fisc...
CN
2006
109views more  CN 2006»
15 years 4 months ago
Quality of service provisioning for composable routing elements
Quality of service (QoS) provisioning for dynamically composable software elements in a programmable router has not received much attention. We present a router platform that supp...
Seung Chul Han, Puneet Zaroo, David K. Y. Yau, Yu ...
BMCBI
2010
80views more  BMCBI 2010»
15 years 4 months ago
Sampling the conformation of protein surface residues for flexible protein docking
Background: The problem of determining the physical conformation of a protein dimer, given the structures of the two interacting proteins in their unbound state, is a difficult on...
Patricia Francis-Lyon, Shengyin Gu, Joel Hass, Nin...
ICPP
2006
IEEE
15 years 10 months ago
Salsa: Scalable Asynchronous Replica Exchange for Parallel Molecular Dynamics Applications
— This paper presents Salsa, a novel, decentralized and asynchronous realization of the “replica exchange” algorithm for simulating the structure, function, folding, and dyna...
Li Zhang, Manish Parashar, Emilio Gallicchio, Rona...