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BMCBI
2008
162views more  BMCBI 2008»
14 years 10 months ago
Background correction using dinucleotide affinities improves the performance of GCRMA
Background: High-density short oligonucleotide microarrays are a primary research tool for assessing global gene expression. Background noise on microarrays comprises a significan...
Raad Z. Gharaibeh, Anthony Fodor, Cynthia Gibas
BMCBI
2007
129views more  BMCBI 2007»
14 years 10 months ago
Integrated network reconstruction, visualization and analysis using YANAsquare
Background: Modeling of metabolic networks includes tasks such as network assembly, network overview, calculation of metabolic fluxes and testing the robustness of the network. Re...
Roland Schwarz, Chunguang Liang, Christoph Kaleta,...
CSB
2004
IEEE
135views Bioinformatics» more  CSB 2004»
15 years 1 months ago
Selection of Patient Samples and Genes for Outcome Prediction
Gene expression profiles with clinical outcome data enable monitoring of disease progression and prediction of patient survival at the molecular level. We present a new computatio...
Huiqing Liu, Jinyan Li, Limsoon Wong
IDA
2009
Springer
15 years 2 months ago
Visualization-Driven Structural and Statistical Analysis of Turbulent Flows
Knowledge extraction from data volumes of ever increasing size requires ever more flexible tools to facilitate interactive query. Interactivity enables real-time hypothesis testin...
Kenny Gruchalla, Mark Rast, Elizabeth Bradley, Joh...
BMCBI
2004
97views more  BMCBI 2004»
14 years 10 months ago
Calibration and assessment of channel-specific biases in microarray data with extended dynamical range
Background: Non-linearities in observed log-ratios of gene expressions, also known as intensity dependent log-ratios, can often be accounted for by global biases in the two channe...
Henrik Bengtsson, Göran Jönsson, Johan V...