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SSDBM
2006
IEEE
156views Database» more  SSDBM 2006»
15 years 4 months ago
On Data and Visualization Models for Signaling Pathways
Signaling pathways are chains of interacting proteins, through which the cell converts a (usually) extracellular signal into a biological response. The number of known signaling p...
Nattakarn Ratprasartporn, Ali Cakmak, Gultekin &Ou...
BMCBI
2008
117views more  BMCBI 2008»
14 years 10 months ago
A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge
Background: The functional characterization of newly discovered proteins has been a challenge in the post-genomic era. Protein-protein interactions provide insights into the funct...
Young-Rae Cho, Lei Shi, Murali Ramanathan, Aidong ...
BMCBI
2005
94views more  BMCBI 2005»
14 years 10 months ago
YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities
Background: A number of algorithms for steady state analysis of metabolic networks have been developed over the years. Of these, Elementary Mode Analysis (EMA) has proven especial...
Roland Schwarz, Patrick Musch, Axel von Kamp, Bern...
BIBE
2007
IEEE
151views Bioinformatics» more  BIBE 2007»
14 years 11 months ago
On the Effectiveness of Constraints Sets in Clustering Genes
—In this paper, we have modified a constrained clustering algorithm to perform exploratory analysis on gene expression data using prior knowledge presented in the form of constr...
Erliang Zeng, Chengyong Yang, Tao Li, Giri Narasim...
IV
2009
IEEE
141views Visualization» more  IV 2009»
15 years 4 months ago
VioNeS - Visual Support for the Analysis of the Next Sub-volume Method
Computational simulation is an established method to gain insight into cellular processes. As the resulting data sets are usually large and complex, visualization can play a signi...
Andrea Unger, Enrico Gutzeit, Matthias Jeschke, He...