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AUSAI
2005
Springer
15 years 3 months ago
Finding Similar Patterns in Microarray Data
Abstract. In this paper we propose a clustering algorithm called sCluster for analysis of gene expression data based on pattern-similarity. The algorithm captures the tight cluster...
Xiangsheng Chen, Jiuyong Li, Grant Daggard, Xiaodi...
BMCBI
2005
127views more  BMCBI 2005»
14 years 9 months ago
Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification
Background: Gene expression programs depend on recognition of cis elements in promoter region of target genes by transcription factors (TFs), but how TFs regulate gene expression ...
Li-Hsieh Lin, Hsiao-Ching Lee, Wen-Hsiung Li, Bor-...
CSB
2004
IEEE
106views Bioinformatics» more  CSB 2004»
15 years 1 months ago
A Theoretical Analysis of Gene Selection
A great deal of recent research has focused on the challenging task of selecting differentially expressed genes from microarray data (`gene selection'). Numerous gene selecti...
Sach Mukherjee, Stephen J. Roberts
NAR
2011
208views Computer Vision» more  NAR 2011»
14 years 20 days ago
Tomato Functional Genomics Database: a comprehensive resource and analysis package for tomato functional genomics
Tomato Functional Genomics Database (TFGD) provides a comprehensive resource to store, query, mine, analyze, visualize and integrate large-scale tomato functional genomics data se...
Zhangjun Fei, Je-Gun Joung, Xuemei Tang, Yi Zheng,...
BMCBI
2008
158views more  BMCBI 2008»
14 years 10 months ago
Analyzing M-CSF dependent monocyte/macrophage differentiation: Expression modes and meta-modes derived from an independent compo
Background: The analysis of high-throughput gene expression data sets derived from microarray experiments still is a field of extensive investigation. Although new approaches and ...
Dominik Lutter, Peter Ugocsai, Margot Grandl, Evel...