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116
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BMCBI
2008
149views more  BMCBI 2008»
14 years 10 months ago
All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning
Background: Automated extraction of protein-protein interactions (PPI) is an important and widely studied task in biomedical text mining. We propose a graph kernel based approach ...
Antti Airola, Sampo Pyysalo, Jari Björne, Tap...
84
Voted
BMCBI
2008
103views more  BMCBI 2008»
14 years 10 months ago
TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model
Background: Protein structure analysis and comparison are major challenges in structural bioinformatics. Despite the existence of many tools and algorithms, very few of them have ...
Mallika Veeramalai, Yuzhen Ye, Adam Godzik
101
Voted
FOSSACS
2005
Springer
15 years 3 months ago
Mathematical Models of Computational and Combinatorial Structures
The general aim of this talk is to advocate a combinatorial perspective, together with its methods, in the investigation and study of models of computation structures. This, of cou...
Marcelo P. Fiore
76
Voted
FCCM
2006
IEEE
137views VLSI» more  FCCM 2006»
15 years 4 months ago
Single Pass, BLAST-Like, Approximate String Matching on FPGAs
Abstract: Approximate string matching is fundamental to bioinformatics, and has been the subject of numerous FPGA acceleration studies. We address issues with respect to FPGA imple...
Martin C. Herbordt, Josh Model, Yongfeng Gu, Bhara...
SACRYPT
1998
Springer
257views Cryptology» more  SACRYPT 1998»
15 years 2 months ago
Cryptanalysis of RC4-like Ciphers
Abstract. RC4, a stream cipher designed by Rivest for RSA Data Security Inc., has found several commercial applications, but little public analysis has been done to date. In this p...
Serge Mister, Stafford E. Tavares