We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...
Discriminative subgraphs are widely used to define the feature space for graph classification in large graph databases. Several scalable approaches have been proposed to mine disc...
- For an iterative process to be parallelized, the operations that comprise the process must be organized into a correct schedule that will allow the hardware to compute the task. ...
We develop a parallel algorithm for a widely used whole genome alignment method called LAGAN. We use the MPI-based protocol to develop parallel solutions for two phases of the alg...
Large latencies over WAN will remain an obstacle to running communication intensive parallel applications on Grid environments. This paper takes one of such applications, Gaussian...