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» Interior-Point Methods in Parallel Computation
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179
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FPL
2010
Springer
188views Hardware» more  FPL 2010»
15 years 1 months ago
SeqHive: A Reconfigurable Computer Cluster for Genome Re-sequencing
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...
142
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SIGMOD
2010
ACM
196views Database» more  SIGMOD 2010»
15 years 3 months ago
GAIA: graph classification using evolutionary computation
Discriminative subgraphs are widely used to define the feature space for graph classification in large graph databases. Several scalable approaches have been proposed to mine disc...
Ning Jin, Calvin Young, Wei Wang
135
Voted
PDPTA
2008
15 years 5 months ago
New Heuristics for Rotation Scheduling
- For an iterative process to be parallelized, the operations that comprise the process must be organized into a correct schedule that will allow the hardware to compute the task. ...
Michael Richter, David Poeschl, Timothy W. O'Neil
123
Voted
BIBM
2008
IEEE
110views Bioinformatics» more  BIBM 2008»
15 years 10 months ago
Genome Alignments Using MPI-LAGAN
We develop a parallel algorithm for a widely used whole genome alignment method called LAGAN. We use the MPI-based protocol to develop parallel solutions for two phases of the alg...
Ruinan Zhang, Huzefa Rangwala, George Karypis
GRID
2005
Springer
15 years 9 months ago
Highly latency tolerant Gaussian elimination
Large latencies over WAN will remain an obstacle to running communication intensive parallel applications on Grid environments. This paper takes one of such applications, Gaussian...
Toshio Endo, Kenjiro Taura