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» Internal loops in RNA secondary structure prediction
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BMCBI
2006
114views more  BMCBI 2006»
14 years 9 months ago
Impact of RNA structure on the prediction of donor and acceptor splice sites
Background: gene identification in genomic DNA sequences by computational methods has become an important task in bioinformatics and computational gene prediction tools are now es...
Sayed-Amir Marashi, Changiz Eslahchi, Hamid Pezesh...
BMCBI
2007
139views more  BMCBI 2007»
14 years 9 months ago
Improving model predictions for RNA interference activities that use support vector machine regression by combining and filterin
Background: RNA interference (RNAi) is a naturally occurring phenomenon that results in the suppression of a target RNA sequence utilizing a variety of possible methods and pathwa...
Andrew S. Peek
JCB
2008
102views more  JCB 2008»
14 years 9 months ago
Canonical RNA Pseudoknot Structures
In this paper, we study k-noncrossing, -canonical RNA pseudoknot structures with minimum arc-length greater or equal to four. Let T OE4 k; .n/ denote the number of these structure...
Gang Ma, Christian M. Reidys
BMCBI
2011
14 years 1 months ago
Structator: fast index-based search for RNA sequence-structure patterns
Background: The secondary structure of RNA molecules is intimately related to their function and often more conserved than the sequence. Hence, the important task of searching dat...
Fernando Meyer, Stefan Kurtz, Rolf Backofen, Sebas...
BMCBI
2007
183views more  BMCBI 2007»
14 years 9 months ago
Considerations in the identification of functional RNA structural elements in genomic alignments
Background: Accurate identification of novel, functional noncoding (nc) RNA features in genome sequence has proven more difficult than for exons. Current algorithms identify and s...
Tomas Babak, Benjamin J. Blencowe, Timothy R. Hugh...