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» Internal loops in RNA secondary structure prediction
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ESA
2005
Springer
136views Algorithms» more  ESA 2005»
15 years 3 months ago
Approximating the 2-Interval Pattern Problem
We address the problem of approximating the 2-Interval Pattern problem over its various models and restrictions. This problem, which is motivated by RNA secondary structure predict...
Maxime Crochemore, Danny Hermelin, Gad M. Landau, ...
DBKDA
2010
IEEE
169views Database» more  DBKDA 2010»
15 years 2 months ago
XLeaf: Twig Evaluation with Skipping Loop Joins and Virtual Nodes
Abstract—XML indexing and search has become an important topic, and twig joins are key building blocks in XML search systems. This paper describes a novel approach using a nested...
Nils Grimsmo, Truls Amundsen Bjørklund, &Os...
JUCS
2006
141views more  JUCS 2006»
14 years 9 months ago
Constraint Based Methods for Biological Sequence Analysis
: The need for processing biological information is rapidly growing, owing to the masses of new information in digital form being produced at this time. Old methodologies for proce...
Maryam Bavarian, Verónica Dahl
BMCBI
2008
134views more  BMCBI 2008»
14 years 9 months ago
Bioinformatic analyses of mammalian 5'-UTR sequence properties of mRNAs predicts alternative translation initiation sites
Background: Utilization of alternative initiation sites for protein translation directed by non-AUG codons in mammalian mRNAs is observed with increasing frequency. Alternative in...
Jill L. Wegrzyn, Thomas M. Drudge, Faramarz Valafa...
BMCBI
2010
93views more  BMCBI 2010»
14 years 9 months ago
Hybridization thermodynamics of NimbleGen Microarrays
Background: While microarrays are the predominant method for gene expression profiling, probe signal variation is still an area of active research. Probe signal is sequence depend...
Ulrike Mückstein, Germán G. Leparc, Al...