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» Internal loops in RNA secondary structure prediction
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BMCBI
2007
153views more  BMCBI 2007»
13 years 6 months ago
Can Clustal-style progressive pairwise alignment of multiple sequences be used in RNA secondary structure prediction?
Background: In ribonucleic acid (RNA) molecules whose function depends on their final, folded three-dimensional shape (such as those in ribosomes or spliceosome complexes), the se...
Amelia B. Bellamy-Royds, Marcel Turcotte
ICALP
2003
Springer
13 years 11 months ago
Problems on RNA Secondary Structure Prediction and Design
We describe several computational problems on prediction and design of RNA molecules.
Anne Condon
SPIRE
2005
Springer
13 years 11 months ago
An Edit Distance Between RNA Stem-Loops
We introduce the notion of conservative edit distance and mapping between two RNA stem-loops. We show that unlike the general edit distance between RNA secondary structures, the co...
Valentin Guignon, Cedric Chauve, Sylvie Hamel
RECOMB
2005
Springer
14 years 6 months ago
Consensus Folding of Unaligned RNA Sequences Revisited
As one of the earliest problems in computational biology, RNA secondary structure prediction (sometimes referred to as "RNA folding") problem has attracted attention agai...
Vineet Bafna, Haixu Tang, Shaojie Zhang