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» Introduction to Randomized Algorithms
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JCC
2006
57views more  JCC 2006»
15 years 3 months ago
A search algorithm for fixed-composition protein design
: We present a computational protein design algorithm for finding low-energy sequences of fixed amino acid composition. The search algorithms used in protein design typically do no...
Geoffrey K. Hom, Stephen L. Mayo
MP
2006
137views more  MP 2006»
15 years 3 months ago
New algorithms for singly linearly constrained quadratic programs subject to lower and upper bounds
There are many applications related to singly linearly constrained quadratic programs subjected to upper and lower bounds. In this paper, a new algorithm based on secant approximat...
Yu-Hong Dai, Roger Fletcher
JCC
2007
70views more  JCC 2007»
15 years 3 months ago
Self-organizing superimposition algorithm for conformational sampling
Abstract: A novel self-organizing algorithm for conformational sampling is introduced, in which precomputed conformations of rigid fragments are used as templates to enforce the de...
Fangqiang Zhu, Dimitris K. Agrafiotis
MOR
2000
162views more  MOR 2000»
15 years 3 months ago
Approximation Algorithms for Disjoint Paths and Related Routing and Packing Problems
Given a network and a set of connection requests on it, we consider the maximum edge-disjoint paths and related generalizations and routing problems that arise in assigning paths f...
Alok Baveja, Aravind Srinivasan
SIAMCO
2000
104views more  SIAMCO 2000»
15 years 3 months ago
Law of the Iterated Logarithm for a Constant-Gain Linear Stochastic Gradient Algorithm
We study almost-sure limiting properties, taken as 0, of the finite horizon sequence of random estimates { 0, 1, 2, . . . , T/ } for the linear stochastic gradient algorithm n+1 ...
J. A. Joslin, A. J. Heunis