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BMCBI
2007
109views more  BMCBI 2007»
15 years 6 months ago
Computational RNA secondary structure design: empirical complexity and improved methods
Background: We investigate the empirical complexity of the RNA secondary structure design problem, that is, the scaling of the typical difficulty of the design task for various cl...
Rosalía Aguirre-Hernández, Holger H....
161
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BMCBI
2007
105views more  BMCBI 2007»
15 years 6 months ago
Predicting RNA secondary structure by the comparative approach: how to select the homologous sequences
Background: The secondary structure of an RNA must be known before the relationship between its structure and function can be determined. One way to predict the secondary structur...
Stefan Engelen, Fariza Tahi
VSTTE
2005
Springer
15 years 11 months ago
Implications of a Data Structure Consistency Checking System
Abstract. We present a framework for verifying that programs correctly preserve important data structure consistency properties. Results from our implemented system indicate that o...
Viktor Kuncak, Patrick Lam, Karen Zee, Martin C. R...
BMCBI
2010
88views more  BMCBI 2010»
15 years 6 months ago
Robust probabilistic superposition and comparison of protein structures
Background: Protein structure comparison is a central issue in structural bioinformatics. The standard dissimilarity measure for protein structures is the root mean square deviati...
Martin Mechelke, Michael Habeck
DKE
2006
157views more  DKE 2006»
15 years 6 months ago
XML structural delta mining: Issues and challenges
Recently, there is an increasing research efforts in XML data mining. These research efforts largely assumed that XML documents are static. However, in reality, the documents are ...
Qiankun Zhao, Ling Chen 0002, Sourav S. Bhowmick, ...