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BMCBI
2005
131views more  BMCBI 2005»
15 years 4 months ago
Functional annotation by identification of local surface similarities: a novel tool for structural genomics
Background: Protein function is often dependent on subsets of solvent-exposed residues that may exist in a similar three-dimensional configuration in non homologous proteins thus ...
Fabrizio Ferrè, Gabriele Ausiello, Andreas ...
ACMMSP
2005
ACM
101views Hardware» more  ACMMSP 2005»
15 years 9 months ago
Transparent pointer compression for linked data structures
64-bit address spaces are increasingly important for modern applications, but they come at a price: pointers use twice as much memory, reducing the effective cache capacity and m...
Chris Lattner, Vikram S. Adve
BMCBI
2004
122views more  BMCBI 2004»
15 years 4 months ago
A comprehensive comparison of comparative RNA structure prediction approaches
Background: An increasing number of researchers have released novel RNA structure analysis and prediction algorithms for comparative approaches to structure prediction. Yet, indep...
Paul P. Gardner, Robert Giegerich
IS
2010
15 years 2 months ago
Extracting a largest redundancy-free XML storage structure from an acyclic hypergraph in polynomial time
Given a hypergraph and a set of embedded functional dependencies, we investigate the problem of determining the conditions under which we can efficiently generate redundancy-free ...
Wai Yin Mok, Joseph Fong, David W. Embley
BMCBI
2010
148views more  BMCBI 2010»
15 years 4 months ago
Structuring heterogeneous biological information using fuzzy clustering of k-partite graphs
Background: Extensive and automated data integration in bioinformatics facilitates the construction of large, complex biological networks. However, the challenge lies in the inter...
Mara L. Hartsperger, Florian Blöchl, Volker S...