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159
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BMCBI
2008
228views more  BMCBI 2008»
15 years 3 months ago
Adaptive diffusion kernel learning from biological networks for protein function prediction
Background: Machine-learning tools have gained considerable attention during the last few years for analyzing biological networks for protein function prediction. Kernel methods a...
Liang Sun, Shuiwang Ji, Jieping Ye
139
Voted
BMCBI
2010
132views more  BMCBI 2010»
15 years 3 months ago
Parallel multiplicity and error discovery rate (EDR) in microarray experiments
Background: In microarray gene expression profiling experiments, differentially expressed genes (DEGs) are detected from among tens of thousands of genes on an array using statist...
Wayne Wenzhong Xu, Clay J. Carter
112
Voted
BMCBI
2006
106views more  BMCBI 2006»
15 years 3 months ago
Gene and protein nomenclature in public databases
Background: Frequently, several alternative names are in use for biological objects such as genes and proteins. Applications like manual literature search, automated text-mining, ...
Katrin Fundel, Ralf Zimmer
117
Voted
DEBU
2007
211views more  DEBU 2007»
15 years 3 months ago
Provenance in Databases: Past, Current, and Future
The need to understand and manage provenance arises in almost every scientific application. In many cases, information about provenance constitutes the proof of correctness of re...
Wang Chiew Tan
126
Voted
BMCBI
2005
169views more  BMCBI 2005»
15 years 3 months ago
An adaptive method for cDNA microarray normalization
Background: Normalization is a critical step in analysis of gene expression profiles. For duallabeled arrays, global normalization assumes that the majority of the genes on the ar...
Yingdong Zhao, Ming-Chung Li, Richard Simon
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