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» Juzi: a tool for repairing complex data structures
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BMCBI
2008
121views more  BMCBI 2008»
14 years 9 months ago
OntoDas - a tool for facilitating the construction of complex queries to the Gene Ontology
Background: Ontologies such as the Gene Ontology can enable the construction of complex queries over biological information in a conceptual way, however existing systems to do thi...
Kieran O'Neill, Alexander García Castro, An...
BMCBI
2008
118views more  BMCBI 2008»
14 years 9 months ago
Inferring transcriptional compensation interactions in yeast via stepwise structure equation modeling
Background: With the abundant information produced by microarray technology, various approaches have been proposed to infer transcriptional regulatory networks. However, few appro...
Grace S. Shieh, Chung-Ming Chen, Ching-Yun Yu, Jui...
BMCBI
2008
117views more  BMCBI 2008»
14 years 9 months ago
RNACompress: Grammar-based compression and informational complexity measurement of RNA secondary structure
Background: With the rapid emergence of RNA databases and newly identified non-coding RNAs, an efficient compression algorithm for RNA sequence and structural information is neede...
Qi Liu, Yu Yang, Chun Chen, Jiajun Bu, Yin Zhang, ...
COLING
2000
14 years 11 months ago
XMLTrans: a Java-based XML Transformation Language for Structured Data
The recently completed MLIS DicoPro project addressed the need for a uniform, platformindependent interface for accessing multiple dictionaries and other lexical resources via the...
Derek Walker, Dominique Petitpierre, Susan Armstro...
BMCBI
2006
87views more  BMCBI 2006»
14 years 9 months ago
XML schemas for common bioinformatic data types and their application in workflow systems
Background: Today, there is a growing need in bioinformatics to combine available software tools into chains, thus building complex applications from existing single-task tools. T...
Philipp N. Seibel, Jan Krüger, Sven Hartmeier...