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CORR
2008
Springer
120views Education» more  CORR 2008»
14 years 10 months ago
A new distance for high level RNA secondary structure comparison
We describe an algorithm for comparing two RNA secondary structures coded in the form of trees that introduces two new operations, called node fusion and edge fusion, besides the t...
Julien Allali, Marie-France Sagot
BMCBI
2004
116views more  BMCBI 2004»
14 years 9 months ago
Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure p
Background: A detailed understanding of an RNA's correct secondary and tertiary structure is crucial to understanding its function and mechanism in the cell. Free energy mini...
Kishore J. Doshi, Jamie J. Cannone, Christian W. C...
ICASSP
2007
IEEE
15 years 4 months ago
Toward Turbo Decoding of RNA Secondary Structure
We propose an iterative probabilistic algorithm for estimation of RNA secondary structure using sequence data from two homologous sequences. The method is intended to exploit inte...
Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathe...
METMBS
2004
196views Mathematics» more  METMBS 2004»
14 years 11 months ago
An Open Problem in RNA Secondary Structure Prediction by the Comparative Approach
Abstract One approach to predict the secondary structure of RNA is the comparative approach. This approach is used when alignment of several homologous sequences of a RNA is availa...
Stefan Engelen, Fariza Tahi
JGAA
2006
69views more  JGAA 2006»
14 years 9 months ago
Efficient drawing of RNA secondary structure
In this paper, we propose a new layout algorithm that draws the secondary structure of a Ribonucleic Acid (RNA) automatically according to some of the biologists' aesthetic c...
David Auber, Maylis Delest, Jean-Philippe Domenger...