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BIOCOMP
2006
14 years 11 months ago
The Use of Context-Sensitive Grammar For Modeling RNA Pseudoknots
- In this study, a context-sensitive grammar is suggested to model various forms of RNA secondary structures, especially pseudoknots. Comparing with a conventional context-free gra...
Keum-Young Sung
BMCBI
2006
161views more  BMCBI 2006»
14 years 10 months ago
A method for rapid similarity analysis of RNA secondary structures
Background: Owing to the rapid expansion of RNA structure databases in recent years, efficient methods for structure comparison are in demand for function prediction and evolution...
Na Liu, Tianming Wang
BMCBI
2008
117views more  BMCBI 2008»
14 years 10 months ago
RNACompress: Grammar-based compression and informational complexity measurement of RNA secondary structure
Background: With the rapid emergence of RNA databases and newly identified non-coding RNAs, an efficient compression algorithm for RNA sequence and structural information is neede...
Qi Liu, Yu Yang, Chun Chen, Jiajun Bu, Yin Zhang, ...
CIBCB
2009
IEEE
14 years 11 months ago
rnaDesign: Local search for RNA secondary structure design
Abstract-- The RNA secondary structure design (SSD) problem is a recently emerging research topic motivated by applications such as customized drug design and the self-assembly of ...
Denny C. Dai, Herbert H. Tsang, Kay C. Wiese
IV
2006
IEEE
108views Visualization» more  IV 2006»
15 years 3 months ago
From Visualization to Manipulation of RNA Secondary and Tertiary Structures
Ribonucleic Acid (RNA) is an important molecule which performs a wide range of functions in biological systems. We present a method for visualizing, exploring and editing RNA mole...
Gilles Bailly, David Auber, Laurence Nigay