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» Kernel Based Functional Gene Grouping
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EACL
2006
ACL Anthology
15 years 14 days ago
Exploiting Shallow Linguistic Information for Relation Extraction from Biomedical Literature
We propose an approach for extracting relations between entities from biomedical literature based solely on shallow linguistic information. We use a combination of kernel function...
Claudio Giuliano, Alberto Lavelli, Lorenza Romano
CPM
2004
Springer
108views Combinatorics» more  CPM 2004»
15 years 4 months ago
Quadratic Time Algorithms for Finding Common Intervals in Two and More Sequences
A popular approach in comparative genomics is to locate groups or clusters of orthologous genes in multiple genomes and to postulate functional association between the genes contai...
Thomas Schmidt, Jens Stoye
BMCBI
2007
120views more  BMCBI 2007»
14 years 11 months ago
Recognition of interferon-inducible sites, promoters, and enhancers
Background: Computational analysis of gene regulatory regions is important for prediction of functions of many uncharacterized genes. With this in mind, search of the target genes...
Elena A. Ananko, Yury V. Kondrakhin, Tatyana I. Me...
COCOA
2009
Springer
15 years 3 months ago
Linear Coherent Bi-cluster Discovery via Line Detection and Sample Majority Voting
Discovering groups of genes that share common expression profiles is an important problem in DNA microarray analysis. Unfortunately, standard bi-clustering algorithms often fail t...
Yi Shi, Zhipeng Cai, Guohui Lin, Dale Schuurmans
88
Voted
BMCBI
2008
148views more  BMCBI 2008»
14 years 11 months ago
Discovering biclusters in gene expression data based on high-dimensional linear geometries
Background: In DNA microarray experiments, discovering groups of genes that share similar transcriptional characteristics is instrumental in functional annotation, tissue classifi...
Xiangchao Gan, Alan Wee-Chung Liew, Hong Yan