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» Kernel Based Functional Gene Grouping
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BMCBI
2006
164views more  BMCBI 2006»
14 years 11 months ago
Evaluation of clustering algorithms for gene expression data
Background: Cluster analysis is an integral part of high dimensional data analysis. In the context of large scale gene expression data, a filtered set of genes are grouped togethe...
Susmita Datta, Somnath Datta
BMCBI
2007
129views more  BMCBI 2007»
14 years 11 months ago
HoughFeature, a novel method for assessing drug effects in three-color cDNA microarray experiments
Background: Three-color microarray experiments can be performed to assess drug effects on the genomic scale. The methodology may be useful in shortening the cycle, reducing the co...
Hongya Zhao, Hong Yan
GECCO
2004
Springer
164views Optimization» more  GECCO 2004»
15 years 4 months ago
Fuzzy Dominance Based Multi-objective GA-Simplex Hybrid Algorithms Applied to Gene Network Models
Hybrid algorithms that combine genetic algorithms with the Nelder-Mead simplex algorithm have been effective in solving certain optimization problems. In this article, we apply a s...
Praveen Koduru, Sanjoy Das, Stephen Welch, Judith ...
BMCBI
2010
129views more  BMCBI 2010»
14 years 11 months ago
A temporal precedence based clustering method for gene expression microarray data
Background: Time-course microarray experiments can produce useful data which can help in understanding the underlying dynamics of the system. Clustering is an important stage in m...
Ritesh Krishna, Chang-Tsun Li, Vicky Buchanan-Woll...
NIPS
2004
15 years 13 days ago
Algebraic Set Kernels with Application to Inference Over Local Image Representations
This paper presents a general family of algebraic positive definite similarity functions over spaces of matrices with varying column rank. The columns can represent local regions ...
Amnon Shashua, Tamir Hazan