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CSB
2005
IEEE
139views Bioinformatics» more  CSB 2005»
15 years 7 months ago
Predicting gene function by combining expression and interaction data
In this study we combined the spurious protein interaction data from the Database of Interacting Proteins with the recently published gene expression data of S. cerevisiae grown w...
Rogier J. P. van Berlo, Lodewyk F. A. Wessels, S. ...
ICDE
2008
IEEE
129views Database» more  ICDE 2008»
16 years 3 months ago
Optimal Boolean Matrix Decomposition: Application to Role Engineering
Abstract-- A decomposition of a binary matrix into two matrices gives a set of basis vectors and their appropriate combination to form the original matrix. Such decomposition solut...
Haibing Lu, Jaideep Vaidya, Vijayalakshmi Atluri
VLDB
2004
ACM
137views Database» more  VLDB 2004»
15 years 7 months ago
Schema-Free XQuery
The widespread adoption of XML holds out the promise that document structure can be exploited to specify precise database queries. However, the user may have only a limited knowle...
Yunyao Li, Cong Yu, H. V. Jagadish
KDD
2005
ACM
103views Data Mining» more  KDD 2005»
15 years 7 months ago
Key semantics extraction by dependency tree mining
We propose a new text mining system which extracts characteristic contents from given documents. We define Key semantics as characteristic sub-structures of syntactic dependencie...
Satoshi Morinaga, Hiroki Arimura, Takahiro Ikeda, ...
BMCBI
2010
123views more  BMCBI 2010»
14 years 8 months ago
Predicting conserved protein motifs with Sub-HMMs
Background: Profile HMMs (hidden Markov models) provide effective methods for modeling the conserved regions of protein families. A limitation of the resulting domain models is th...
Kevin Horan, Christian R. Shelton, Thomas Girke