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» Knowledge-based data analysis and interpretation
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BMCBI
2008
136views more  BMCBI 2008»
14 years 10 months ago
GPAT: Retrieval of genomic annotation from large genomic position datasets
Background: Recent genome wide transcription factor binding site or chromatin modification mapping analysis techniques, such as chromatin immunoprecipitation (ChIP) linked to DNA ...
Arnaud Krebs, Mattia Frontini, Làszlò...
BMCBI
2010
50views more  BMCBI 2010»
14 years 10 months ago
Scanner calibration revisited
Background: Calibration of a microarray scanner is critical for accurate interpretation of microarray results. Shi et al. (BMC Bioinformatics, 2005, 6, Art. No. S11 Suppl. 2.) rep...
Alexander E. Pozhitkov
BMCBI
2011
14 years 5 months ago
A Platform for Processing Expression of Short Time Series (PESTS)
Background: Time course microarray profiles examine the expression of genes over a time domain. They are necessary in order to determine the complete set of genes that are dynamic...
Anshu Sinha, Marianthi Markatou
FLAIRS
2007
15 years 7 days ago
The Evolution and Evaluation of an Internet Search Tool for Information Analysts
We are working on a project aimed at building next generation analyst support tools that focus analysts’ attention on the most critical and novel information found within the da...
Elizabeth T. Whitaker, Robert L. Simpson Jr.
BMCBI
2010
143views more  BMCBI 2010»
14 years 10 months ago
ETE: a python Environment for Tree Exploration
Background: Many bioinformatics analyses, ranging from gene clustering to phylogenetics, produce hierarchical trees as their main result. These are used to represent the relations...
Jaime Huerta-Cepas, Joaquín Dopazo, Toni Ga...