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» Knowledge-based data analysis and interpretation
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BMCBI
2007
115views more  BMCBI 2007»
14 years 9 months ago
SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis
Background: There are many fewer genes in the human genome than there are expressed transcripts. Alternative splicing is the reason. Alternatively spliced transcripts are often sp...
Ari B. Kahn, Michael C. Ryan, Hongfang Liu, Barry ...
76
Voted
BMCBI
2010
118views more  BMCBI 2010»
14 years 10 months ago
Testing for mean and correlation changes in microarray experiments: an application for pathway analysis
Background: Microarray experiments examine the change in transcript levels of tens of thousands of genes simultaneously. To derive meaningful data, biologists investigate the resp...
Mayer Alvo, Zhongzhu Liu, Andrew Williams, Carole ...
66
Voted
BMCBI
2006
179views more  BMCBI 2006»
14 years 10 months ago
Accurate and unambiguous tag-to-gene mapping in serial analysis of gene expression
Background: In this study, we present a robust and reliable computational method for tag-togene assignment in serial analysis of gene expression (SAGE). The method relies on curre...
Rodrigo Malig, Cristian Varela, Eduardo Agosin, Fr...
ICC
2007
IEEE
117views Communications» more  ICC 2007»
15 years 4 months ago
Applying Techniques from Frame Synchronization for Biological Sequence Analysis
— During the last years, the amount of genetic data available has increased rapidly which creates the demand for advanced techniques for their interpretation. In the following, w...
Johanna Weindl, Joachim Hagenauer
KDD
2006
ACM
139views Data Mining» more  KDD 2006»
15 years 10 months ago
Generating semantic annotations for frequent patterns with context analysis
As a fundamental data mining task, frequent pattern mining has widespread applications in many different domains. Research in frequent pattern mining has so far mostly focused on ...
Qiaozhu Mei, Dong Xin, Hong Cheng, Jiawei Han, Che...