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» Landscape of Clustering Algorithms
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BMCBI
2010
198views more  BMCBI 2010»
15 years 5 months ago
ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment
Background: There is an increasing demand to assemble and align large-scale biological sequence data sets. The commonly used multiple sequence alignment programs are still limited...
Taeho Kim, Hyun Joo
147
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BMCBI
2006
114views more  BMCBI 2006»
15 years 5 months ago
A high level interface to SCOP and ASTRAL implemented in Python
Background: Benchmarking algorithms in structural bioinformatics often involves the construction of datasets of proteins with given sequence and structural properties. The SCOP da...
James A. Casbon, Gavin E. Crooks, Mansoor A. S. Sa...
157
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BMCBI
2007
86views more  BMCBI 2007»
15 years 5 months ago
Tandem mass spectrometry data quality assessment by self-convolution
Background: Many algorithms have been developed for deciphering the tandem mass spectrometry (MS) data sets. They can be essentially clustered into two classes. The first performs...
Keng Wah Choo, Wai Mun Tham
IJHPCA
2008
131views more  IJHPCA 2008»
15 years 5 months ago
De Novo Ultrascale Atomistic Simulations On High-End Parallel Supercomputers
We present a de novo hierarchical simulation framework for first-principles based predictive simulations of materials and their validation on high-end parallel supercomputers and ...
Aiichiro Nakano, Rajiv K. Kalia, Ken-ichi Nomura, ...
JSS
2008
217views more  JSS 2008»
15 years 5 months ago
MUSEMBLE: A novel music retrieval system with automatic voice query transcription and reformulation
So far, many researches have been done to develop efficient music retrieval systems, and query-by-humming has been considered as one of the most intuitive and effective query meth...
Seungmin Rho, Byeong-jun Han, Eenjun Hwang, Minkoo...