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» Large scale hierarchical clustering of protein sequences
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JDCTA
2010
130views more  JDCTA 2010»
14 years 5 months ago
A Search Algorithm for Clusters in a Network or Graph
A novel breadth-first based structural clustering method for graphs is proposed. Clustering is an important task for analyzing complex networks such as biological networks, World ...
Dongming Chen, Jing Wang, Xiaodong Chen, Xiaowei X...
BMCBI
2005
97views more  BMCBI 2005»
14 years 11 months ago
The yeast kinome displays scale free topology with functional hub clusters
Background: The availability of interaction databases provides an opportunity for researchers to utilize immense amounts of data exclusively in silico. Recently there has been an ...
Robin E. C. Lee, Lynn A. Megeney
BMCBI
2007
101views more  BMCBI 2007»
14 years 11 months ago
Relationship between insertion/deletion (indel) frequency of proteins and essentiality
Background: In a previous study, we demonstrated that some essential proteins from pathogenic organisms contained sizable insertions/deletions (indels) when aligned to human prote...
Simon K. Chan, Michael Hsing, Fereydoun Hormozdiar...
BMCBI
2008
124views more  BMCBI 2008»
14 years 11 months ago
Inferring modules of functionally interacting proteins using the Bond Energy Algorithm
Background: Non-homology based methods such as phylogenetic profiles are effective for predicting functional relationships between proteins with no considerable sequence or struct...
Ryosuke Watanabe, Enrique Morett, Edgar E. Vallejo
WWW
2010
ACM
15 years 3 months ago
Hierarchical cluster visualization in web mapping systems
This paper presents a technique for visualizing large spatial data sets in Web Mapping Systems (WMS). The technique creates a hierarchical clustering tree, which is subsequently u...
Jean-Yves Delort