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» Large scale hierarchical clustering of protein sequences
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AUSAI
2009
Springer
15 years 7 months ago
A Graph Distance Based Structural Clustering Approach for Networks
In the era of information explosion, structured data emerge on a large scale. As a description of structured data, network has drawn attention of researchers in many subjects. Netw...
Xin Su, Chunping Li
BMCBI
2008
135views more  BMCBI 2008»
15 years 1 months ago
Functional site prediction selects correct protein models
Background: The prediction of protein structure can be facilitated by the use of constraints based on a knowledge of functional sites. Without this information it is still possibl...
Vijayalakshmi Chelliah, William R. Taylor
IPPS
2009
IEEE
15 years 8 months ago
A metascalable computing framework for large spatiotemporal-scale atomistic simulations
A metascalable (or “design once, scale on new architectures”) parallel computing framework has been developed for large spatiotemporal-scale atomistic simulations of materials...
Ken-ichi Nomura, Richard Seymour, Weiqiang Wang, H...
BMCBI
2007
148views more  BMCBI 2007»
15 years 1 months ago
Blast sampling for structural and functional analyses
Background: The post-genomic era is characterised by a torrent of biological information flooding the public databases. As a direct consequence, similarity searches starting with ...
Anne Friedrich, Raymond Ripp, Nicolas Garnier, Emm...
BMCBI
2007
133views more  BMCBI 2007»
15 years 1 months ago
MATLIGN: a motif clustering, comparison and matching tool
Background: Sequence motifs representing transcription factor binding sites (TFBS) are commonly encoded as position frequency matrices (PFM) or degenerate consensus sequences (CS)...
Matti Kankainen, Ari Löytynoja