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» Large scale hierarchical clustering of protein sequences
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AUSAI
2009
Springer
15 years 5 months ago
A Graph Distance Based Structural Clustering Approach for Networks
In the era of information explosion, structured data emerge on a large scale. As a description of structured data, network has drawn attention of researchers in many subjects. Netw...
Xin Su, Chunping Li
100
Voted
BMCBI
2008
135views more  BMCBI 2008»
14 years 11 months ago
Functional site prediction selects correct protein models
Background: The prediction of protein structure can be facilitated by the use of constraints based on a knowledge of functional sites. Without this information it is still possibl...
Vijayalakshmi Chelliah, William R. Taylor
79
Voted
IPPS
2009
IEEE
15 years 5 months ago
A metascalable computing framework for large spatiotemporal-scale atomistic simulations
A metascalable (or “design once, scale on new architectures”) parallel computing framework has been developed for large spatiotemporal-scale atomistic simulations of materials...
Ken-ichi Nomura, Richard Seymour, Weiqiang Wang, H...
BMCBI
2007
148views more  BMCBI 2007»
14 years 11 months ago
Blast sampling for structural and functional analyses
Background: The post-genomic era is characterised by a torrent of biological information flooding the public databases. As a direct consequence, similarity searches starting with ...
Anne Friedrich, Raymond Ripp, Nicolas Garnier, Emm...
BMCBI
2007
133views more  BMCBI 2007»
14 years 11 months ago
MATLIGN: a motif clustering, comparison and matching tool
Background: Sequence motifs representing transcription factor binding sites (TFBS) are commonly encoded as position frequency matrices (PFM) or degenerate consensus sequences (CS)...
Matti Kankainen, Ari Löytynoja