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» Large scale hierarchical clustering of protein sequences
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BMCBI
2007
116views more  BMCBI 2007»
14 years 11 months ago
Linear array of conserved sequence motifs to discriminate protein subfamilies: study on pyridine nucleotide-disulfide reductases
Background: The pyridine nucleotide disulfide reductase (PNDR) is a large and heterogeneous protein family divided into two classes (I and II), which reflect the divergent evoluti...
César L. Avila, Viviana A. Rapisarda, Ricar...
105
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BMCBI
2010
121views more  BMCBI 2010»
14 years 8 months ago
A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences
Background: We propose a sequence clustering algorithm and compare the partition quality and execution time of the proposed algorithm with those of a popular existing algorithm. T...
David J. Russell, Samuel F. Way, Andrew K. Benson,...
ICCCN
2007
IEEE
15 years 5 months ago
Large-Scale QoS-Aware Service-Oriented Networking with a Clustering-Based Approach
—Motivated by the fact that most of the existing QoS service composition solutions have limited scalability, we develop a hierarchical-based solution framework to achieve scalabi...
Jingwen Jin, Jin Liang, Jingyi Jin, Klara Nahrsted...
JCB
2007
83views more  JCB 2007»
14 years 11 months ago
Evolutionary Networks in the Formatted Protein Sequence Space
In our recent work, a new approach to establish sequence relatedness, by walking through the protein sequence space, was introduced. The sequence space is built from 20 amino acid...
Zakharia M. Frenkel, Edward N. Trifonov
NAR
2011
305views Computer Vision» more  NAR 2011»
14 years 1 months ago
CDD: a Conserved Domain Database for the functional annotation of proteins
NCBI’s Conserved Domain Database (CDD) is a resource for the annotation of protein sequences with the location of conserved domain footprints, and functional sites inferred from...
Aron Marchler-Bauer, Shennan Lu, John B. Anderson,...