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» Large scale hierarchical clustering of protein sequences
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ICPR
2002
IEEE
15 years 4 months ago
A Large Scale Clustering Scheme for Kernel K-Means
Kernel functions can be viewed as a non-linear transformation that increases the separability of the input data by mapping them to a new high dimensional space. The incorporation ...
Rong Zhang, Alexander I. Rudnicky
NAR
2010
148views more  NAR 2010»
14 years 5 months ago
SIMAP - a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters
The prediction of protein function as well as the reconstruction of evolutionary genesis employing sequence comparison at large is still the most powerful tool in sequence analysi...
Thomas Rattei, Patrick Tischler, Stefan Götz,...
BMCBI
2006
178views more  BMCBI 2006»
14 years 11 months ago
MannDB - A microbial database of automated protein sequence analyses and evidence integration for protein characterization
Background: MannDB was created to meet a need for rapid, comprehensive automated protein sequence analyses to support selection of proteins suitable as targets for driving the dev...
Carol L. Ecale Zhou, Marisa Lam, Jason Smith, Adam...
BMCBI
2010
175views more  BMCBI 2010»
14 years 11 months ago
Calibur: a tool for clustering large numbers of protein decoys
Background: Ab initio protein structure prediction methods generate numerous structural candidates, which are referred to as decoys. The decoy with the most number of neighbors of...
Shuai Cheng Li, Yen Kaow Ng
EGPGV
2004
Springer
214views Visualization» more  EGPGV 2004»
15 years 4 months ago
Hierarchical Visualization and Compression of Large Volume Datasets Using GPU Clusters
We describe a system for the texture-based direct volume visualization of large data sets on a PC cluster equipped with GPUs. The data is partitioned into volume bricks in object ...
Magnus Strengert, Marcelo Magallón, Daniel ...