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» Large scale hierarchical clustering of protein sequences
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BMCBI
2010
121views more  BMCBI 2010»
14 years 11 months ago
Knowledge-based annotation of small molecule binding sites in proteins
Background: The study of protein-small molecule interactions is vital for understanding protein function and for practical applications in drug discovery. To benefit from the rapi...
Ratna R. Thangudu, Manoj Tyagi, Benjamin A. Shoema...
PRIB
2009
Springer
135views Bioinformatics» more  PRIB 2009»
15 years 5 months ago
Sequential Hierarchical Pattern Clustering
Abstract. Clustering is a widely used unsupervised data analysis technique in machine learning. However, a common requirement amongst many existing clustering methods is that all p...
Bassam Farran, Amirthalingam Ramanan, Mahesan Nira...
BMCBI
2010
122views more  BMCBI 2010»
14 years 6 months ago
Functional enrichment analyses and construction of functional similarity networks with high confidence function prediction by PF
Background: A new paradigm of biological investigation takes advantage of technologies that produce large high throughput datasets, including genome sequences, interactions of pro...
Troy Hawkins, Meghana Chitale, Daisuke Kihara
BIBE
2007
IEEE
128views Bioinformatics» more  BIBE 2007»
15 years 5 months ago
QOMA2: Optimizing the alignment of many sequences
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
Xu Zhang, Tamer Kahveci
RECOMB
1998
Springer
15 years 3 months ago
The hierarchical organization of molecular structure computations
The task of computing molecular structure from combinations of experimental and theoretical constraints is expensive because of the large number of estimated parameters (the 3D co...
Cheng Che Chen, Jaswinder Pal Singh, Russ B. Altma...