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BMCBI
2010
172views more  BMCBI 2010»
15 years 2 months ago
Comparison of evolutionary algorithms in gene regulatory network model inference
Background: The evolution of high throughput technologies that measure gene expression levels has created a data base for inferring GRNs (a process also known as reverse engineeri...
Alina Sîrbu, Heather J. Ruskin, Martin Crane
BMCBI
2005
246views more  BMCBI 2005»
15 years 2 months ago
ParPEST: a pipeline for EST data analysis based on parallel computing
Background: Expressed Sequence Tags (ESTs) are short and error-prone DNA sequences generated from the 5' and 3' ends of randomly selected cDNA clones. They provide an im...
Nunzio D'Agostino, Mario Aversano, Maria Luisa Chi...
BMCBI
2010
148views more  BMCBI 2010»
15 years 2 months ago
Structuring heterogeneous biological information using fuzzy clustering of k-partite graphs
Background: Extensive and automated data integration in bioinformatics facilitates the construction of large, complex biological networks. However, the challenge lies in the inter...
Mara L. Hartsperger, Florian Blöchl, Volker S...
ICDE
2008
IEEE
113views Database» more  ICDE 2008»
15 years 8 months ago
A rank-rewrite framework for summarizing XML documents
Abstract— With XML becoming a standard for data representation and exchange, we can expect to see large scale repositories and warehouses of XML data. In order for users to under...
Maya Ramanath, Kondreddi Sarath Kumar
ECMDAFA
2010
Springer
228views Hardware» more  ECMDAFA 2010»
15 years 5 months ago
Example-Based Sequence Diagrams to Colored Petri Nets Transformation Using Heuristic Search
Dynamic UML models like sequence diagrams (SD) lack sufficient formal semantics, making it difficult to build automated tools for their analysis, simulation and validation. A commo...
Marouane Kessentini, Arbi Bouchoucha, Houari A. Sa...