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» Large-Scale Data Analysis Using Heuristic Methods
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135
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BMCBI
2008
128views more  BMCBI 2008»
15 years 3 months ago
SIGffRid: A tool to search for sigma factor binding sites in bacterial genomes using comparative approach and biologically drive
Background: Many programs have been developed to identify transcription factor binding sites. However, most of them are not able to infer two-word motifs with variable spacer leng...
Fabrice Touzain, Sophie Schbath, Isabelle Debled-R...
123
Voted
BMCBI
2006
119views more  BMCBI 2006»
15 years 3 months ago
Utilization of two sample t-test statistics from redundant probe sets to evaluate different probe set algorithms in GeneChip stu
Background: The choice of probe set algorithms for expression summary in a GeneChip study has a great impact on subsequent gene expression data analysis. Spiked-in cRNAs with know...
Zihua Hu, Gail R. Willsky
159
Voted
BMCBI
2007
149views more  BMCBI 2007»
15 years 3 months ago
A unified framework for finding differentially expressed genes from microarray experiments
Background: This paper presents a unified framework for finding differentially expressed genes (DEGs) from the microarray data. The proposed framework has three interrelated modul...
Jahangheer S. Shaik, Mohammed Yeasin
125
Voted
BMCBI
2005
113views more  BMCBI 2005»
15 years 3 months ago
Normal uniform mixture differential gene expression detection for cDNA microarrays
Background: One of the primary tasks in analysing gene expression data is finding genes that are differentially expressed in different samples. Multiple testing issues due to the ...
Nema Dean, Adrian E. Raftery
133
Voted
GIR
2007
ACM
15 years 7 months ago
Eliciting concepts of place for text-based image retrieval
This paper describes research being employed in the Tripod project to improve the retrieval of photographs through a comprehensive knowledge of where they were taken. The methods ...
Alistair J. Edwardes, Ross S. Purves