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» Lattice model refinement of protein structures
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CORR
2010
Springer
124views Education» more  CORR 2010»
14 years 7 months ago
Lattice model refinement of protein structures
To find the best lattice model representation of a given full atom protein structure is a hard computational problem. Several greedy methods have been suggested where results are ...
Martin Mann, Alessandro Dal Palù
PRIB
2010
Springer
176views Bioinformatics» more  PRIB 2010»
14 years 7 months ago
An On/Off Lattice Approach to Protein Structure Prediction from Contact Maps
Abstract. An important unsolved problem in structural bioinformatics is that of protein structure prediction (PSP), the reconstruction of a biologically plausible three-dimensional...
Stefano Teso, Cristina Di Risio, Andrea Passerini,...
EMNLP
2006
14 years 11 months ago
Protein folding and chart parsing
How can proteins fold so quickly into their unique native structures? We show here that there is a natural analogy between parsing and the protein folding problem, and demonstrate...
Julia Hockenmaier, Aravind K. Joshi, Ken A. Dill
IJDMB
2010
128views more  IJDMB 2010»
14 years 7 months ago
Computing approximate solutions of the protein structure determination problem using global constraints on discrete crystal latt
: Crystal lattices are discrete models of the three-dimensional space that have been effectively employed to facilitate the task of determining proteins' natural conformation....
Alessandro Dal Palù, Agostino Dovier, Enric...
BIOCOMP
2008
14 years 11 months ago
Inverse protein folding in 3D hexagonal prism lattice under HP model
Alireza Hadj Khodabakhshi, Ján Manuch, Aras...