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BMCBI
2006
129views more  BMCBI 2006»
15 years 1 months ago
Fast index based algorithms and software for matching position specific scoring matrices
Background: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs in nucleotide as well as amino acid sequences....
Michael Beckstette, Robert Homann, Robert Giegeric...
JSA
2008
74views more  JSA 2008»
15 years 1 months ago
Resource conflict detection in simulation of function unit pipelines
Processor simulators are important parts of processor design toolsets in which they are used to verify and evaluate the properties of the designed processors. While simulating arch...
Pekka Jääskeläinen, Vladimír...
ICS
2009
Tsinghua U.
14 years 11 months ago
Refereeing conflicts in hardware transactional memory
In the search for high performance, most transactional memory (TM) systems execute atomic blocks concurrently and must thus be prepared for data conflicts. The TM system must then...
Arrvindh Shriraman, Sandhya Dwarkadas
WFLP
2009
Springer
277views Algorithms» more  WFLP 2009»
15 years 8 months ago
Termination of Context-Sensitive Rewriting with Built-In Numbers and Collection Data Structures
Context-sensitive rewriting is a restriction of rewriting that can be used to elegantly model declarative specification and programming languages such as Maude. Furthermore, it ca...
Stephan Falke, Deepak Kapur
HASKELL
2005
ACM
15 years 7 months ago
Haskell on a shared-memory multiprocessor
Multi-core processors are coming, and we need ways to program them. The combination of purely-functional programming and explicit, monadic threads, communicating using transaction...
Tim Harris, Simon Marlow, Simon L. Peyton Jones