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» Learning Methods for DNA Binding in Computational Biology
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RECOMB
2003
Springer
15 years 10 months ago
Physical network models and multi-source data integration
We develop a new framework for inferring models of transcriptional regulation. The models in this approach, which we call physical models, are constructed on the basis of verifiab...
Chen-Hsiang Yeang, Tommi Jaakkola
KDD
2002
ACM
125views Data Mining» more  KDD 2002»
15 years 10 months ago
Pattern discovery in sequences under a Markov assumption
In this paper we investigate the general problem of discovering recurrent patterns that are embedded in categorical sequences. An important real-world problem of this nature is mo...
Darya Chudova, Padhraic Smyth
BMCBI
2010
109views more  BMCBI 2010»
14 years 9 months ago
Predicting gene function using hierarchical multi-label decision tree ensembles
Background: S. cerevisiae, A. thaliana and M. musculus are well-studied organisms in biology and the sequencing of their genomes was completed many years ago. It is still a challe...
Leander Schietgat, Celine Vens, Jan Struyf, Hendri...
RECOMB
2004
Springer
15 years 10 months ago
Probabilistic discovery of overlapping cellular processes and their regulation
In this paper, we explore modeling overlapping biological processes. We discuss a probabilistic model of overlapping biological processes, gene membership in those processes, and ...
Alexis Battle, Eran Segal, Daphne Koller
ALT
2008
Springer
15 years 6 months ago
Computational Models of Neural Representations in the Human Brain
Abstract For many centuries scientists have wondered how the human brain represents thoughts in terms of the underlying biology of neural activity. Philosophers, linguists, cogniti...
Tom M. Mitchell