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» Learning Methods for DNA Binding in Computational Biology
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CVPR
2011
IEEE
14 years 7 months ago
Learning Better Image Representations Using 'Flobject Analysis'
Unsupervised learning can be used to extract image representations that are useful for various and diverse vision tasks. After noticing that most biological vision systems for int...
Inmar Givoni, Patrick Li, Brendan Frey
AB
2007
Springer
15 years 1 months ago
Efficient Haplotype Inference with Pseudo-boolean Optimization
Abstract. Haplotype inference from genotype data is a key computational problem in bioinformatics, since retrieving directly haplotype information from DNA samples is not feasible ...
Ana Graça, João Marques-Silva, In&ec...
DIS
2010
Springer
14 years 8 months ago
Adapted Transfer of Distance Measures for Quantitative Structure-Activity Relationships
Quantitative structure-activity relationships (QSARs) are regression models relating chemical structure to biological activity. Such models allow to make predictions for toxicologi...
Ulrich Rückert, Tobias Girschick, Fabian Buch...
RECOMB
2008
Springer
15 years 10 months ago
BayCis: A Bayesian Hierarchical HMM for Cis-Regulatory Module Decoding in Metazoan Genomes
The transcriptional regulatory sequences in metazoan genomes often consist of multiple cis-regulatory modules (CRMs). Each CRM contains locally enriched occurrences of binding site...
Tien-ho Lin, Pradipta Ray, Geir Kjetil Sandve, Sel...
ISMB
2000
14 years 11 months ago
Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data
We have developed a set of methods and tools for automatic discovery of putative regulatory signals in genome sequences. The analysis pipeline consists of gene expression data clu...
Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Ro...