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BMCBI
2007
154views more  BMCBI 2007»
14 years 9 months ago
Inferring biological networks with output kernel trees
Background: Elucidating biological networks between proteins appears nowadays as one of the most important challenges in systems biology. Computational approaches to this problem ...
Pierre Geurts, Nizar Touleimat, Marie Dutreix, Flo...
BMCBI
2008
97views more  BMCBI 2008»
14 years 10 months ago
SiteSeek: Post-translational modification analysis using adaptive locality-effective kernel methods and new profiles
Background: Post-translational modifications have a substantial influence on the structure and functions of protein. Post-translational phosphorylation is one of the most common m...
Paul D. Yoo, Yung Shwen Ho, Bing Bing Zhou, Albert...
BIOINFORMATICS
2005
140views more  BIOINFORMATICS 2005»
14 years 9 months ago
Profile-based direct kernels for remote homology detection and fold recognition
Motivation: Remote homology detection between protein sequences is a central problem in computational biology. Supervised learning algorithms based on support vector machines are ...
Huzefa Rangwala, George Karypis
NIPS
2007
14 years 11 months ago
Discriminative K-means for Clustering
We present a theoretical study on the discriminative clustering framework, recently proposed for simultaneous subspace selection via linear discriminant analysis (LDA) and cluster...
Jieping Ye, Zheng Zhao, Mingrui Wu
JAIR
2010
132views more  JAIR 2010»
14 years 8 months ago
Using Local Alignments for Relation Recognition
This paper discusses the problem of marrying structural similarity with semantic relatedness for Information Extraction from text. Aiming at accurate recognition of relations, we ...
Sophia Katrenko, Pieter W. Adriaans, Maarten van S...