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» Learning Rule Representations from Boolean Data
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BMCBI
2007
202views more  BMCBI 2007»
15 years 1 months ago
ProtNet: a tool for stochastic simulations of protein interaction networks dynamics
Background: Protein interactions support cell organization and mediate its response to any specific stimulus. Recent technological advances have produced large data-sets that aim ...
Massimo Bernaschi, Filippo Castiglione, Alessandra...
KDD
2009
ACM
191views Data Mining» more  KDD 2009»
16 years 2 months ago
Scalable pseudo-likelihood estimation in hybrid random fields
Learning probabilistic graphical models from high-dimensional datasets is a computationally challenging task. In many interesting applications, the domain dimensionality is such a...
Antonino Freno, Edmondo Trentin, Marco Gori
KDD
2009
ACM
200views Data Mining» more  KDD 2009»
15 years 8 months ago
Visual analysis of documents with semantic graphs
In this paper, we present a technique for visual analysis of documents based on the semantic representation of text in the form of a directed graph, referred to as semantic graph....
Delia Rusu, Blaz Fortuna, Dunja Mladenic, Marko Gr...
BMCBI
2010
259views more  BMCBI 2010»
14 years 9 months ago
Rule-based spatial modeling with diffusing, geometrically constrained molecules
Background: We suggest a new type of modeling approach for the coarse grained, particle-based spatial simulation of combinatorially complex chemical reaction systems. In our appro...
Gerd Gruenert, Bashar Ibrahim, Thorsten Lenser, Ma...
BMCBI
2011
14 years 5 months ago
Computable visually observed phenotype ontological framework for plants
Background: The ability to search for and precisely compare similar phenotypic appearances within and across species has vast potential in plant science and genetic research. The ...
Jaturon Harnsomburana, Jason M. Green, Adrian S. B...