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BIBE
2007
IEEE
128views Bioinformatics» more  BIBE 2007»
15 years 4 months ago
QOMA2: Optimizing the alignment of many sequences
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
Xu Zhang, Tamer Kahveci
BMCBI
2008
149views more  BMCBI 2008»
14 years 9 months ago
Evolution of biological sequences implies an extreme value distribution of type I for both global and local pairwise alignment s
Background: Confidence in pairwise alignments of biological sequences, obtained by various methods such as Blast or Smith-Waterman, is critical for automatic analyses of genomic d...
Olivier Bastien, Eric Maréchal
HPDC
2010
IEEE
14 years 10 months ago
Comparison of resource platform selection approaches for scientific workflows
Cloud computing is increasingly considered as an additional computational resource platform for scientific workflows. The cloud offers opportunity to scale-out applications from d...
Yogesh L. Simmhan, Lavanya Ramakrishnan
VIS
2004
IEEE
136views Visualization» more  VIS 2004»
15 years 11 months ago
Visibility Culling for Time-Varying Volume Rendering Using Temporal Occlusion Coherence
Typically there is a high coherence in data values between neighboring time steps in an iterative scientific software simulation; this characteristic similarly contributes to a co...
Jinzhu Gao, Han-Wei Shen, Jian Huang, James Arthur...
KDD
2007
ACM
193views Data Mining» more  KDD 2007»
15 years 10 months ago
Joint optimization of wrapper generation and template detection
Many websites have large collections of pages generated dynamically from an underlying structured source like a database. The data of a category are typically encoded into similar...
Shuyi Zheng, Ruihua Song, Ji-Rong Wen, Di Wu