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BMCBI
2006
141views more  BMCBI 2006»
15 years 1 months ago
Identification of consensus RNA secondary structures using suffix arrays
Background: The identification of a consensus RNA motif often consists in finding a conserved secondary structure with minimum free energy in an ensemble of aligned sequences. How...
Mohammad Anwar, Truong Nguyen, Marcel Turcotte
BMCBI
2006
111views more  BMCBI 2006»
15 years 1 months ago
Tools for integrated sequence-structure analysis with UCSF Chimera
Background: Comparing related structures and viewing the structures in the context of sequence alignments are important tasks in protein structure-function research. While many pr...
Elaine C. Meng, Eric F. Pettersen, Gregory S. Couc...
CORR
2006
Springer
109views Education» more  CORR 2006»
15 years 1 months ago
On Conditional Branches in Optimal Decision Trees
The decision tree is one of the most fundamental ing abstractions. A commonly used type of decision tree is the alphabetic binary tree, which uses (without loss of generality) &quo...
Michael B. Baer
JCSS
2008
81views more  JCSS 2008»
15 years 1 months ago
A simulator for adaptive parallel applications
Dynamically allocating computing nodes to parallel applications is a promising technique for improving the utilization of cluster resources. Detailed simulations can help identify...
Basile Schaeli, Sebastian Gerlach, Roger D. Hersch
INTEGRATION
2006
82views more  INTEGRATION 2006»
15 years 1 months ago
On whitespace and stability in physical synthesis
In the context of physical synthesis, large-scale standard-cell placement algorithms must facilitate incremental changes to layout, both local and global. In particular, flexible ...
Saurabh N. Adya, Igor L. Markov, Paul G. Villarrub...