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WSC
1997
14 years 11 months ago
A Virtual PNNI Network Testbed
We describe our experiences designing and implementing a virtual PNNI network testbed. The network elements and signaling protocols modeled are consistent with the ATM Forum PNNI ...
Kalyan S. Perumalla, Matthew Andrews, Sandeep N. B...
GECCO
2008
Springer
127views Optimization» more  GECCO 2008»
14 years 11 months ago
Adaptive discretization on multidimensional continuous search spaces
This paper extends an adaptive discretization method, Spliton-Demand (SoD), to be capable of handling multidimensional continuous search spaces. The proposed extension is called m...
Jiun-Jiue Liou, Ying-Ping Chen
ALMOB
2007
155views more  ALMOB 2007»
14 years 10 months ago
Finding coevolving amino acid residues using row and column weighting of mutual information and multi-dimensional amino acid rep
Background: Some amino acid residues functionally interact with each other. This interaction will result in an evolutionary co-variation between these residues – coevolution. Ou...
Rodrigo Gouveia-Oliveira, Anders Gorm Pedersen
BMCBI
2010
124views more  BMCBI 2010»
14 years 10 months ago
Estimation and efficient computation of the true probability of recurrence of short linear protein sequence motifs in unrelated
Background: Large datasets of protein interactions provide a rich resource for the discovery of Short Linear Motifs (SLiMs) that recur in unrelated proteins. However, existing met...
Norman E. Davey, Richard J. Edwards, Denis C. Shie...
BMCBI
2010
150views more  BMCBI 2010»
14 years 10 months ago
AMS 3.0: prediction of post-translational modifications
Background: We present here the recent update of AMS algorithm for identification of post-translational modification (PTM) sites in proteins based only on sequence information, us...
Subhadip Basu, Dariusz Plewczynski