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ICDE
2009
IEEE
153views Database» more  ICDE 2009»
15 years 11 months ago
XBLEND: Visual XML Query Formulation Meets Query Processing
Due to the complexity of XML query languages, the need for visual query interfaces that can reduce the burden of query formulation is fundamental to the spreading of XML to wider c...
Zhou Yong, Sourav S. Bhowmick, Erwin Leonardi, Kla...
ICDE
2006
IEEE
178views Database» more  ICDE 2006»
15 years 11 months ago
Declarative Querying for Biological Sequences
The ongoing revolution in life sciences research is producing vast amounts of genetic and proteomic sequence data. Scientists want to pose increasingly complex queries on this dat...
Sandeep Tata, Jignesh M. Patel, James S. Friedman,...
IPPS
2009
IEEE
15 years 4 months ago
Evaluating the use of GPUs in liver image segmentation and HMMER database searches
In this paper we present the results of parallelizing two life sciences applications, Markov random fieldsbased (MRF) liver segmentation and HMMER’s Viterbi algorithm, using GP...
John Paul Walters, Vidyananth Balu, Suryaprakash K...
IV
2009
IEEE
141views Visualization» more  IV 2009»
15 years 4 months ago
Connecting Genes with Diseases
We present a visual data mining application using the combination of clinical data, pathways and biomolecular data. Using pathways to navigate and filter the clinical and molecula...
Heimo Müller, Robert Reihs, Stefan Sauer 0002...
CSEE
2009
Springer
15 years 4 months ago
Software Engineering Education for Bioinformatics
As software engineering educators, it is important for us to realize the increasing domainspecificity of software, and incorporate these changes in our design of teaching material...
Medha Umarji, Carolyn B. Seaman, Akif Günes K...