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» Limits on the Usefulness of Random Oracles
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107
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BMCBI
2010
176views more  BMCBI 2010»
15 years 23 days ago
Bayesian statistical modelling of human protein interaction network incorporating protein disorder information
Background: We present a statistical method of analysis of biological networks based on the exponential random graph model, namely p2-model, as opposed to previous descriptive app...
Svetlana Bulashevska, Alla Bulashevska, Roland Eil...
BMCBI
2008
123views more  BMCBI 2008»
15 years 23 days ago
PocketMatch: A new algorithm to compare binding sites in protein structures
Background: Recognizing similarities and deriving relationships among protein molecules is a fundamental requirement in present-day biology. Similarities can be present at various...
Kalidas Yeturu, Nagasuma Chandra
102
Voted
BMCBI
2008
145views more  BMCBI 2008»
15 years 23 days ago
The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction
Background: Amino acids responsible for structure, core function or specificity may be inferred from multiple protein sequence alignments where a limited set of residue types are ...
Jonathan R. Manning, Emily R. Jefferson, Geoffrey ...
85
Voted
BMCBI
2008
120views more  BMCBI 2008»
15 years 23 days ago
E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI)
Background: The Codon Adaptation Index (CAI) is a measure of the synonymous codon usage bias for a DNA or RNA sequence. It quantifies the similarity between the synonymous codon u...
Pere Puigbò, Ignacio G. Bravo, Santiago Gar...
141
Voted
CORR
2010
Springer
190views Education» more  CORR 2010»
15 years 22 days ago
Overlap properties of geometric expanders
The overlap number of a finite (d + 1)-uniform hypergraph H is the largest constant c(H) (0, 1] such that no matter how we map the vertices of H into Rd , there is a point covered...
Jacob Fox, Mikhail Gromov, Vincent Lafforgue, Assa...