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» Link Discovery in Graphs Derived from Biological Databases
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BMCBI
2010
123views more  BMCBI 2010»
13 years 1 months ago
Predicting conserved protein motifs with Sub-HMMs
Background: Profile HMMs (hidden Markov models) provide effective methods for modeling the conserved regions of protein families. A limitation of the resulting domain models is th...
Kevin Horan, Christian R. Shelton, Thomas Girke
BMCBI
2006
104views more  BMCBI 2006»
13 years 6 months ago
MANET: tracing evolution of protein architecture in metabolic networks
Background: Cellular metabolism can be characterized by networks of enzymatic reactions and transport processes capable of supporting cellular life. Our aim is to find evolutionar...
Hee Shin Kim, Jay E. Mittenthal, Gustavo Caetano-A...
BMCBI
2010
112views more  BMCBI 2010»
13 years 6 months ago
PhenoFam-gene set enrichment analysis through protein structural information
Background: With the current technological advances in high-throughput biology, the necessity to develop tools that help to analyse the massive amount of data being generated is e...
Maciej Paszkowski-Rogacz, Mikolaj Slabicki, M. Ter...
BMCBI
2005
151views more  BMCBI 2005»
13 years 6 months ago
ProMiner: rule-based protein and gene entity recognition
Background: Identification of gene and protein names in biomedical text is a challenging task as the corresponding nomenclature has evolved over time. This has led to multiple syn...
Daniel Hanisch, Katrin Fundel, Heinz-Theodor Mevis...
WWW
2009
ACM
14 years 7 months ago
Smart Miner: a new framework for mining large scale web usage data
In this paper, we propose a novel framework called SmartMiner for web usage mining problem which uses link information for producing accurate user sessions and frequent navigation...
Murat Ali Bayir, Ismail Hakki Toroslu, Ahmet Cosar...