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» Linking Representation with Meaning
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WWW
2004
ACM
15 years 10 months ago
Incremental formalization of document annotations through ontology-based paraphrasing
For the manual semantic markup of documents to become widespread, users must be able to express annotations that conform to ontologies (or schemas) that have shared meaning. Howev...
Jim Blythe, Yolanda Gil
RECOMB
2009
Springer
15 years 10 months ago
An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations
Collective behavior involving distally separate regions in a protein is known to widely affect its function. In this paper, we present an online approach to study and characterize ...
Arvind Ramanathan, Pratul K. Agarwal, Maria Kurnik...
POPL
2008
ACM
15 years 10 months ago
Systems biology, models, and concurrency
Models will play a central role in the representation, storage, manipulation, and communication of knowledge in systems biology. Models capable of fulfilling such a role will like...
Walter Fontana
POPL
2007
ACM
15 years 10 months ago
Program verification as probabilistic inference
In this paper, we propose a new algorithm for proving the validity or invalidity of a pre/postcondition pair for a program. The algorithm is motivated by the success of the algori...
Sumit Gulwani, Nebojsa Jojic
POPL
2005
ACM
15 years 10 months ago
Mutatis mutandis: safe and predictable dynamic software updating
Dynamic software updates can be used to fix bugs or add features to a running program without downtime. Essential for some applications and convenient for others, low-level dynami...
Gareth Stoyle, Michael W. Hicks, Gavin M. Bierman,...