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SASP
2009
IEEE
291views Hardware» more  SASP 2009»
15 years 4 months ago
A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs
—This paper describes a multi-threaded parallel design and implementation of the Smith-Waterman (SM) algorithm on compute unified device architecture (CUDA)-compatible graphic pr...
Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada
95
Voted
BMCBI
2008
211views more  BMCBI 2008»
14 years 9 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
LAWEB
2006
IEEE
15 years 3 months ago
OWeB: A Framework for Offline Web Browsing
Internet browsing is highly dependent on the real-time network availability and speed. This becomes a significant constraint when browsing over slow and intermittent networks. In ...
Ganesh Ananthanarayanan, Sean Olin Blagsvedt, Kent...
CSREASAM
2006
14 years 10 months ago
Reinforcing Access Control Using Fuzzy Relation Equations
Current computer security systems are based on the premise that once a user presents valid credentials to the authentication system (e.g. valid ID and password), they are granted ...
Ali Berrached, André de Korvin
ENTCS
2008
140views more  ENTCS 2008»
14 years 9 months ago
Higher-Order Separation Logic in Isabelle/HOLCF
We formalize higher-order separation logic for a first-order imperative language with procedures and local variables in Isabelle/HOLCF. The assertion language is modeled in such a...
Carsten Varming, Lars Birkedal